Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIDRPLEGKVAFITGAARGLGRAHAVRLAADGANIIAVDICEQI-ASVPYPLSTADDLAATVELVEDAGGGIVARQGDVRDRASLSVALQAGLDEFGRLDIVVANAGI----AMMQAGDDGWRDVIDVNLTGVFHTVQVAIPTLIEQGTGGSIVLISSAAGLVGIGSSDPGSLGYAAAKHGVVGLMRAYANHLAPQNIRVNSVHPCGVDTPMINNEFFQQWLTTADMDAPH-NLGNALPVELVQPT------DIANAVAWLASEEARYVTGVTLPVDAGFVNKR |
3PGX Chain:C ((13-276)) | -----LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGL----KATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMME------IFARHPSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGSGTLTGTQIPVDKG----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PGX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172259 for 2177 contacts (-79.1/contact) +
2D Compatibility (PS) -26824 + (NN) -7868 + (LL) 1260
1D Compatibility (HY) -21600 + (ID) 6250
Total energy: -233541.0 ( -107.28 by residue)
QMean score : 0.483
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