Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTARPLSELVERGWAAALEPVADQVAHMGQFLRAEIAAGRRYLPAGSNVLRAFTFPFDNVRVLIVGQDPYPTPGHAVGLSFSVAPDVRPWPRSLANIFDEYTADL-GYPLPSNGDLTPWAQRGVLLLNRVLTVRPSNPASHRGKGWEAVTECAIRALAARAAPLVAILWGRDASTLKPMLAAGNCVAIESPHPSPLSASRGFFGSRPFSRANELLVGMGAEPIDWRLP
2SSP Chain:E ((55-221))
----------------------------------------------------------DVKVVILGQDPYHGPNQAHGLCFSVQRPVPP-PPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPASVYRGFFGCRHFSKTNELLQKSGKKPIDWK--
General information:
TITO was launched using:
RESULT:
Template:
2SSP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76835 for 1334 contacts (-57.6/contact) +
2D Compatibility (PS) -18254 + (NN) -14821 + (LL) 4864
1D Compatibility (HY) -13200 + (ID) 3800
Total energy: -122046.0 ( -91.49 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_2SSP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2SSP-query.scw
PDB file :
Tito_Scwrl_2SSP.pdb
: