Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGRLLALA-CVDGHGSVLMPCGRCRQVLLEHGGSELLI----DHPVRPRRLGDLLPDAFGLDDLPRERR
1ZAB Chain:B ((21-143))
-----------SSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISSDLQEEFISPCGACRQVMREFGTDWAVYMTKPDGTFVVRTVQELLPASFGPEDLQ----
General information:
TITO was launched using:
RESULT:
Template:
1ZAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78949 for 857 contacts (-92.1/contact) +
2D Compatibility (PS) -13327 + (NN) -7677 + (LL) 900
1D Compatibility (HY) -7200 + (ID) 2450
Total energy: -108703.0 ( -126.84 by residue)
QMean score : 0.316
(partial model without unconserved sides chains):
PDB file :
Tito_1ZAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZAB-query.scw
PDB file :
Tito_Scwrl_1ZAB.pdb
: