Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAIDPNSIGAVTEPMLFEWTDRDTLLYAIGVGAGTGDLAFTTENSH--GI-DQQVLPTYAVICCPAF-GA--AAKVGTFNPAALLHGSQGIRLHAPLPAAGKLSVVTEVADIQDKGEGKNAIVVLRGRGCDPESGSLVAETLTTLVLRGQGGFGGARGERP---AAPEFPDRHPDARIDMPTREDQALIYRLSGDRNPLHSDPWFATQLAGFPKPILHGLCTYGVAGRALVAELGGGVAANITSIAARFTKPVFPGETLSTVIWRTEPGRAVFRTEVAGSDGAEARVVLDDGAVEYVAG |
| 3OML Chain:A ((310-590)) | --------GGDAIEDAFEFNSKELITYALGIGAS--VKNAKDMRFLYENDADFAAIPTFFVLPGLLLQMSTDK----------ILHGEQYLEIVDDLPTSGTLLTNGKVFDVMDKGS--GAVVVTNSESFDE-SGRLLVRNQSTTFIVG--------DPIAGVVPLQPAPNRQPDATVQYTTSEDQAALYRLSGDKNPLHIDPQMALL-AGFKTPILHGLCTLGFSVRAVLAQFADNNPALFKAVKVRFSGPVIPGQTLRVDLWKQG-TRINFRTVVVE-T---GKEVIS-GAYVD--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OML.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -101592 for 1993 contacts (-51.0/contact) +
2D Compatibility (PS) -26177 + (NN) -9117 + (LL) 772
1D Compatibility (HY) -13600 + (ID) 4500
Total energy: -154214.0 ( -77.38 by residue)
QMean score : 0.393
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