Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVREAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSG----VVDTVVVAVPADRT--DEARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVL--PLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
2YC3 Chain:A ((5-224))
-------VSVILLAGGQG-------PKQYIPLLGQPI---ALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGKERQDSVYSGLQEIDVNSE--LVCIHDSARPLVNTEDVEKV---LKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSE--GLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL--
General information:
TITO was launched using:
RESULT:
Template:
2YC3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137880 for 1559 contacts (-88.4/contact) +
2D Compatibility (PS) -21812 + (NN) -7088 + (LL) 2192
1D Compatibility (HY) -14000 + (ID) 3600
Total energy: -182188.0 ( -116.86 by residue)
QMean score : 0.387
(partial model without unconserved sides chains):
PDB file :
Tito_2YC3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YC3-query.scw
PDB file :
Tito_Scwrl_2YC3.pdb
: