Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLSIYQASIPTFLRTLGNLSAILKKAAAHAEAKNIDPRIFIDARLAPDMFPLARQVQIASDAAKGAGARLAGLEVPSYADTETTFDELQARIARTVEFLEGIREEQLDGAEERNVTLKVRGQEISFNGRDFLFGF-ALPNFFFHVTTAYAILRHNGVELGKMDFLGGA
2POL Chain:A ((1-122))
MKFTVEREHLLKPLQQVSGPLG------------------------GRPTLPILGNLLLQVA---DGTLSLTGTDLEMEMVARVALVQPHEPGATTVP-ARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEA
General information:
TITO was launched using:
RESULT:
Template:
2POL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43984 for 878 contacts (-50.1/contact) +
2D Compatibility (PS) -12780 + (NN) -2643 + (LL) 2816
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -61291.0 ( -69.81 by residue)
QMean score : 0.194
(partial model without unconserved sides chains):
PDB file :
Tito_2POL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2POL-query.scw
PDB file :
Tito_Scwrl_2POL.pdb
: