Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQSGSMHMGGGGGAGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGE--NQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFA---QVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA
1U5X Chain:A ((105-241))
KHSVLHLVPVNITSDV---------TEVMWQPVLRRGRGLEAQGD----IVRVWD-------------------TGIYLLYSQVLFHDVTFTMGQVVSREGQGRRETLFRCIRSMPSDAYNSCYSAGVFHLHQGDIITVKIPRANAKLSLSPHGTFLGFVKL-----
General information:
TITO was launched using:
RESULT:
Template:
1U5X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8118 for 889 contacts (-9.1/contact) +
2D Compatibility (PS) -13479 + (NN) -2398 + (LL) 2076
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -25769.0 ( -28.99 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_1U5X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U5X-query.scw
PDB file :
Tito_Scwrl_1U5X.pdb
: