Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLDWTCKHHADL-TLKELYALLQLRTEVFVVEQKCPYQEVDGLDLVGDTHHLMAWRD-GQLLAYLRLLDPVRHEGQVVIGRVVSSSAARGQGLGHQLMERALQAAERLWLDTPVYLSAQAHLQAYYGRYGFVAVTEVYLEDD-----IPHIGMRRA
2KCW Chain:A ((1-147))
MVISIRRSRHEEGEELVAIWCRSVDATHDFLSAEYRTELEDLVRSFLPEAPLWVAVNERDQPVGFMLLSGQ-------HMDALFIDPDVRGCGVGRVLVEHALSMAPELTTNVN---EQNEQAVGFYKKVGFKVTGRSEVDDLGKPYPLLNLAYVGA
General information:
TITO was launched using:
RESULT:
Template:
2KCW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71425 for 1048 contacts (-68.2/contact) +
2D Compatibility (PS) -14938 + (NN) -2870 + (LL) 1040
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -94193.0 ( -89.88 by residue)
QMean score : 0.255
(partial model without unconserved sides chains):
PDB file :
Tito_2KCW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KCW-query.scw
PDB file :
Tito_Scwrl_2KCW.pdb
: