Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLRASFVLLALSCAAPLLSLAEP---------LRFAGDDGCPYLCPG-----TPQRPGYLVEALSQVLRE--------------------PPHFDSLPWPRAVQMVRDGHRDGLVGAYGLDGLRVG----SEPIGWVGLAFYTRHDSDWHYSGDASLLGQRLGLAQGYVNNPRFEAWRSQAGDDDLHLQVLGGERV--LPRNLQKLLLGRIDVLLEDRDIIEHYLEHHPQLAGQIRRAGELPGRQPLHVGLSPHLPEVDARLAELDEGLRQLRREGTLKVLGERYRLSFE--- |
1PB7 Chain:A ((4-292)) | ----TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCD----LVTTGELFFRSGFGIGMRKD----SPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PB7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -82732 for 1810 contacts (-45.7/contact) +
2D Compatibility (PS) -25716 + (NN) -9504 + (LL) 1228
1D Compatibility (HY) -9600 + (ID) 1550
Total energy: -127874.0 ( -70.65 by residue)
QMean score : 0.306
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