Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTCAYRREIHHAHVAIRDWLAGDSRADALDALMARFAEDFSMVTPHG-VVLDKTALGELFRSKGGT-RPGLRIEIDGESLLAS-GVDGATLAYREIQSD--A-AG---RSERLSTVVLHRDDEGRLYWRHLQETFCG
3D9R Chain:A ((8-131))
------EELAVIEAAAIAYLTAFNR-ADIPAVIATYTDDGVLMGPGRPAAVGKDELAEVYLSVFETVGFDMAYEIKEVV---QTSADWAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGS--WQTARYCTSK
General information:
TITO was launched using:
RESULT:
Template:
3D9R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24511 for 810 contacts (-30.3/contact) +
2D Compatibility (PS) -12099 + (NN) -3281 + (LL) 1560
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -42981.0 ( -53.06 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_3D9R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D9R-query.scw
PDB file :
Tito_Scwrl_3D9R.pdb
: