Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLWRQTPDLEQLNASQKNSIGDLLGIRFEAFDDESLTASMPVDSRTHQPFGLLHGGASVVLAESLGSMASYLCVDTSQYYCVGLEVNANHLRGLRSGRVTAVARAIHLGRTTHVWDIRLSGDDGKPSCIARLTMAVVPLAGRAG
4K49 Chain:A ((2-136))
--IWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKV-VGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL-------
General information:
TITO was launched using:
RESULT:
Template:
4K49.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90768 for 1040 contacts (-87.3/contact) +
2D Compatibility (PS) -13975 + (NN) -1822 + (LL) 316
1D Compatibility (HY) -14400 + (ID) 3550
Total energy: -124199.0 ( -119.42 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_4K49.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K49-query.scw
PDB file :
Tito_Scwrl_4K49.pdb
: