Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGSHQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVM--PVVERADALLCYPTPYEG-FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDVQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASL-TTSEAEVA-KMESDVAEGQVVVA--PYFSSIDTAASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGS-WRVEDVQRHLYDI-CIDAPQG-PVRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPYVVVHNLDDWSASMGGGALP |
| 3LOP Chain:A ((5-354)) | ------DISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTTDPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNT--ANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEA---QLLGLSSIDPGILQKVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLAEAIRRAGPKPTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVG-PNGLV--------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3LOP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -207631 for 3129 contacts (-66.4/contact) +
2D Compatibility (PS) -37424 + (NN) -21304 + (LL) 1460
1D Compatibility (HY) -3600 + (ID) 2800
Total energy: -271299.0 ( -86.70 by residue)
QMean score : 0.640
|
|
|