Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPRPSLTLTLLQAREAAMSFFRPSLNQHGLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDMEKNYQRIQERFGEEKLAQLLELLNELKKIKP
3CDH Chain:A ((12-148))
--FVSGYLLYLLAASSEEASAQFHDHIRAQGLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVA------RVRVRLTDDGRALAESLVASARAHETRLLSALADTDAARIKGVLRTLLDVL-
General information:
TITO was launched using:
RESULT:
Template:
3CDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62225 for 855 contacts (-72.8/contact) +
2D Compatibility (PS) -14376 + (NN) -8141 + (LL) 252
1D Compatibility (HY) -8800 + (ID) 1500
Total energy: -94790.0 ( -110.87 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_3CDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CDH-query.scw
PDB file :
Tito_Scwrl_3CDH.pdb
: