Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELNLTTDEARVSYGIGRQLGDQLRENPVPGMTLDAVLAGLSDAFAGIDSRVSGEALSASFQVIRERMQAEAQAKAEAAAGEGRAYLAENAKREGVTVLPSGLQFEVLSTGEGAK-PSREDTVRTHYHGTLIDGTVFDSSYQRGQPAEFPVGG--VIAGWVEALQLMNAGSKWRLHVPSELAYGGQA-VGSIPPHSVLVFDVELLEIL
1J4R Chain:B ((1-106))
------------------------------------------------------------------------------------------------------GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL-
General information:
TITO was launched using:
RESULT:
Template:
1J4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60677 for 736 contacts (-82.4/contact) +
2D Compatibility (PS) -11110 + (NN) -3305 + (LL) 7204
1D Compatibility (HY) -6800 + (ID) 2350
Total energy: -77038.0 ( -104.67 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_1J4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J4R-query.scw
PDB file :
Tito_Scwrl_1J4R.pdb
: