Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDLQQLFENNVRWAEAIKQEDPDFFAKLARQQTPEYLWIGCSDARVPANEIVGMLPGDLFVHRNVANVVLHTDLNCLSVIQFAVDVLKVKHILVTGHYGCGGVRASLHNDQLGLIDGWLRSIRDLAYEYREHLEQLPTEEERVDRLCELNVIQQVANVSHTSIVQNAWHRGQSLSVHGCIYGIKDGLWKNLNVTVSGLDQLPPQYRLSPLGGCC
3MF3 Chain:B ((1-206))
MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQVIHTDFNCLSVVQYAVDVLKIEHIIICGHTNCGGIHAAMADKDLGLINNWLLHIRDIWFKHGHLLGKL-SPEKRADMLTKINVAEQVYNLGRTSIVKSAWERGQKLSLHGWVYDVNDGFLVDQGVMATSRETLEISYR--------
General information:
TITO was launched using:
RESULT:
Template:
3MF3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153512 for 1535 contacts (-100.0/contact) +
2D Compatibility (PS) -22029 + (NN) -9209 + (LL) -188
1D Compatibility (HY) -23200 + (ID) 5150
Total energy: -213288.0 ( -138.95 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3MF3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MF3-query.scw
PDB file :
Tito_Scwrl_3MF3.pdb
: