Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLS-TGFSKNKDADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIG-EEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAA-GKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGE-GLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRGIVVDRSLRTSHANIYALGDCAEVDGL-------NLLYVMPLMACARALAQTLAGNPSQVAYGPMPVTVKTPACPLVVSPPPRGMDGQ-WLVEGSGTDLKVLCRDTAGRVIGYALTGAAVNEKLALNKELPGLMA |
| 3LXD Chain:A ((7-383)) | -AERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERIC-IRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGNGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPVPYKATPWFWS-NQYDLKLQTVGLSTGHDNAVLRGDPATRSFSVVY-LKGGKVVALDCVNMVK--------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3LXD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -282727 for 3162 contacts (-89.4/contact) +
2D Compatibility (PS) -40062 + (NN) -16908 + (LL) 1772
1D Compatibility (HY) -16800 + (ID) 4400
Total energy: -359125.0 ( -113.58 by residue)
QMean score : 0.439
|
|
|