Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRMRFSGISGCLSAAVLALGVGGAPVVQADALGDSLEQAHIRKATFAA-------PAWEG-----YTNADGSGLYWDLLKQVYAPYGLDVKFINM------------PWNRANKLMTAGSMVDGVPGEIPGVEGKLYAQLPIDIEYHG-------VMHAAKTPFSGRASLTGKRVGWRHSYNLIPAEQRDFTLVECVRPERCTEQVQN--GELDFFLDE-------PDELEKQRSEAHLPADAYPIAQL-------------------PPGKESFMTFADSAS---------GRLLREVYDARVRQMAASGEL--RALYQRWNSEVPGAVQALSAQ---- |
1TRK Chain:A ((3-337)) | ---QFTDIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHL--TGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYGSLHAGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1TRK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -49360 for 1908 contacts (-25.9/contact) +
2D Compatibility (PS) -27138 + (NN) -1910 + (LL) 800
1D Compatibility (HY) -6400 + (ID) 1750
Total energy: -85758.0 ( -44.95 by residue)
QMean score : 0.208
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