Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFPAGFGWAAATAAYQVEGGWDADGKGPCVWDTFTHQGGERVFKNQTGDVACGSYTLWEEDLKCIKQLGLTHYRFSLSWSRLLPDGTTGFINQKGIDYYNKIIDDLLKNGVTPIVTLYHFDLPQTLED-QGGWLSEAIIESFDKYAQFCFSTFGDRVKQWITINEANVLSVMSYDLGMFPPGIPHF-----------GTGGYQAAHNLIKAHARSWHSYDSLFRKKQKGMVSLSLFAVWLEPADPNSVSDQEAAKRAITFHLDLFAKPIFIDGDYPEVVKSQIASMSQKQGYPSSRLPEFTEEEKKMIKGTADFFAVQYYTTRLIKYQENKKGELG---ILQDAEIEFFP----DPSWK--NVDWIYVVPWGVCKLLKYIKDTYNNPVIYITENGFPQSDP------APLDDTQRWEYFRQTFQELFKAIQLDKVNLQVYCAWSLLDNFEWNQGYSSRFGLFHVDFEDPARPRVPYTSAKEYAKIIRNNGLEAHL |
| 3GNP Chain:A ((16-488)) | -SFPEGFVFGTASAAYQYEGAVKEDGRGQTIWDTFAHTFG-KITDFSNADVAVDQYHRFEEDIQLMADMGMDAYRFSIAWSRIYPNGV-GQVNQAGIDHYNKLIDALLAKGIQPYVTLYHWDLPQALEDKYKGWLDRQIVDDFAAYAETCFREFGDRVKHWITLNEPHTVAIQGYDAGLQAPGRCSVLLHLYCKAGNSGTEPYVVAHHFILAHAAAASIYRTKYKATQNGQLGIAFDVMWFEPMS-NTTIDIEAAKRAQEFQLGWFADPFF-FGDYPATMRARVG----------ERLPRFTADEAAVVKGALDFVGINHYTTYYTRHNNTNIIGTLLNNTLADTGTVSLPFKNGKPIGDRANSIWLYIVPRGMRSLMNYVKERYNSPPVYITENGMDDSNNPFISIKDALKDSKRIKYHNDYLTNLAASIKEDGCDVRGYFAWSLLDNWEWAAGYSSRFGLYFVDYKD-NLKRYPKNSVQWFKALLKT------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -252449 for 3957 contacts (-63.8/contact) +
2D Compatibility (PS) -47391 + (NN) -14201 + (LL) 888
1D Compatibility (HY) -37600 + (ID) 9450
Total energy: -360203.0 ( -91.03 by residue)
QMean score : 0.542
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