Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGFSTFLKNRWPDYAATSIYMINLAVFDLLLVLSLPFKMVLSQVQSPFP---SLCTLVECLYFVSMYGSVFTICFISMDRFLAIRYPLLVSHLRSPRKIFGICCTIWVLVWTGSIPIYSFHGKVEK----YMCFHNMSDD------TWSAKVFFPLEVFGFLLPMGIMGFCCSRSIHIL--------------------------------------LGRRDHTQ-DWVQQKACIYSIAASLAVFVVSFLPVHLGFFLQFLVRNSF--IVECRAKQSISFFLQLSMCFSNVNCCLDVFCYYFVIKEFRMNIRAHRPSRVQLVLQDTTISRG |
4XNV Chain:A ((38-382)) | ------SFKCALTKTGFQFYYLP-AVYILVFIIGFLGNSVAIWMFVFHMKP----WSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKSLGRLKK-KNAICISVLVWLIVVVAISPILFYSGTGVRKNKTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -276947 for 2116 contacts (-130.9/contact) +
2D Compatibility (PS) -28968 + (NN) -5301 + (LL) 2056
1D Compatibility (HY) -26800 + (ID) 3550
Total energy: -339510.0 ( -160.45 by residue)
QMean score : 0.233
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