Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------MRNHTEITEFILLGLTDDPNFQVV-----IFVFLLITYMLSIT-------------GNLTLITITLL-----DSHLQTPMYFFLRNFSILEI------SFTTVSIPKF--LGNIISGDKTISFN-NCIVQLFFFILLGVTE-----------------FYLLAAMSYDRYVAICK-PLHCLSIMNRRVCTLLVFTSWLVSFLIIFPALMLLLKLHYCRSNIIDHFTCDYFPLLQLACSDTKFLEVMGFSCAAFTLMFTLALIFLSYIYIIR------TILRIPSTSQRTKAFSTCSSHMVVVSISYGSCIFMYIKPSAKDRVS--LSKGVAILNTSVAP---MMNPFIYSLRNQQVKQAFINMARKTVFFTST |
| 1CJD Chain:A ((15-383)) | LRNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETS-GWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEA--IYQGAGAADCEFEE--ISYTVYQSYLD---QLPVGQNGYI-LPLIDLSTLYNLENSAQAGLT----PNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLD-----------PKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CJD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -293211 for 2080 contacts (-141.0/contact) +
2D Compatibility (PS) -30318 + (NN) 9281 + (LL) 2376
1D Compatibility (HY) -5200 + (ID) 2900
Total energy: -319972.0 ( -153.83 by residue)
QMean score : 0.141
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