Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLSAGLGLLMLVAVVEFLIGLIGNGSLVVWSFREWIRKFNWSSYNLIILGLAGCRFLLQWLIILDLSLFPLFQSSRWLRYLSIFWVL----VSQASLWFATFLS------VFYCKKITTFDRPAYLWLKQRAYNLSLWCLL--------GYFIINLLL------TVQIGLTFYHPPQGNSSIRYPFESWQYLYAFQLNSGSYLPLVVFLVSSGMLIVSLYTHHKKMKVHSAGRRDV---RAKAHITALKSLGCFLLLHLVYIMASPFSITSKTYPPDLTSVFIWETLMAAYPSLHSLILIMGIPRVKQTCQKILWKTVCARRCWGP-- |
| 4R1D Chain:B ((1-301)) | MDKTGW---ITHCFGRFLIDL-PPDAVINAGYYLWGDRIEYLDDKPTELAARVDRLEQEWRTQRHKSKGNMFLRKIDFGNESVGLLSWSSEVASKTYLLDTYVTSKPTWHVYRWKGKVSVDREQHAVEISRALARNLRSRAPKEIPSEPGFCIDHAYIAGDSFQVERFGVGVTFPEHPG-------------ARFEFRSSTGAELNSLLERVDGFVQNMLSTFAGMETLRKGKHPVGSLPGEEYLVAGSDKG---------QRGYTFMWEVQGKEESLTEPNLTAGLAVLERSNENGKPPPPAFKSDKEALE-LWDTIVDSIRVRPTS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -215128 for 1992 contacts (-108.0/contact) +
2D Compatibility (PS) -28847 + (NN) -2919 + (LL) 2760
1D Compatibility (HY) 1600 + (ID) 2200
Total energy: -244734.0 ( -122.86 by residue)
QMean score : 0.092
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