Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFAVIETGGKQYLVKKGSVIKVE-KLEAEEGKEVEIDKAVCLSGNGLSYLTD-------ATVKAEVLEQCRGEKIIIFKKKRRKNYRRKTGHRQYITVLRINEINLQK
4CE4 Chain:V ((99-195))
LFAVVHFAGHQWKVTAEDLILIENELDVACGERIRLEKVLLVGADNFTLLGKPLLGKELVRVEATVIEKTESWPKINMKFQKRKNYQRKRITVNPQTVLRINSIEUNK
General information:
TITO was launched using:
RESULT:
Template:
4CE4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22458 for 447 contacts (-50.2/contact) +
2D Compatibility (PS) -9764 + (NN) 1531 + (LL) 192
1D Compatibility (HY) -7200 + (ID) 1250
Total energy: -38949.0 ( -87.13 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_4CE4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CE4-query.scw
PDB file :
Tito_Scwrl_4CE4.pdb
: