Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MAVPDRRVSKTRAAKRRTHYSVKLAKPVKAKDGTWKLPHHINKFTKEY
1D0G Chain:R ((62-101))
RCTRCDSGEVELSPCTTTRNTVCQCE--------EGTFREEDSPEMCRKCR
General information:
TITO was launched using:
RESULT:
Template:
1D0G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9236 for 169 contacts (54.7/contact) +
2D Compatibility (PS) -4036 + (NN) -424 + (LL) 708
1D Compatibility (HY) 400 + (ID) 200
Total energy: 5684.0 ( 33.63 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_1D0G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D0G-query.scw
PDB file :
Tito_Scwrl_1D0G.pdb
: