Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHYSYEAFLKDSLELAKQVERLC-GIPEALVCVMRGGMTLVHFLSLHWNLRE-VYGINAISYDTTKRQ-NALKIENTPTIKDHLKTILVVDEIVDSGNSLEAVLKVLQDKHPDKKFYSASLFQKTSA---KYKADAFLKD--APEWIDFFWEVDLKNLKSH
1YFZ Chain:A ((35-192))
ILITEEQLKAKVKELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKP-RSLKICTILDKPERREADVKVDYCGFKIPDKFVVGYGLDYAEKYRNLP
General information:
TITO was launched using:
RESULT:
Template:
1YFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74358 for 1096 contacts (-67.8/contact) +
2D Compatibility (PS) -15986 + (NN) -5819 + (LL) -76
1D Compatibility (HY) -9200 + (ID) 1500
Total energy: -106939.0 ( -97.57 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_1YFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YFZ-query.scw
PDB file :
Tito_Scwrl_1YFZ.pdb
: