Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKKEERLGVLLWFRFSRFYNRNMKLTNQNLR-AAGISTAQFDCIAQIGLDKEITQQQLAEKLVVTKGNVTQLLAKLEQLGYITRTKTGREKHITLTEKGQACYRENVPKQEAFQQAQFDKLTRDEQKELLKLLKKLGE
2FA5 Chain:A ((17-151))
--NLEQFLPYRLSVL----SNRISGNIAKVYGDRYGMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIR------RSMLALSPAGRQVYETVAPLVNEMEQRLMSVFSAEEQQTLERLIDRLA-
General information:
TITO was launched using:
RESULT:
Template:
2FA5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31644 for 813 contacts (-38.9/contact) +
2D Compatibility (PS) -13656 + (NN) -6378 + (LL) 1036
1D Compatibility (HY) -6800 + (ID) 1200
Total energy: -58642.0 ( -72.13 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_2FA5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FA5-query.scw
PDB file :
Tito_Scwrl_2FA5.pdb
: