Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLSTAKERQLKIVNRLKV-EQFMRIIDLVEFVNYSEATVKRDLVELEKEGLVRRTRGGAMIIDNKKIDLPYLMKMNERSNETSKIRIADIAKS-------LIRDDMVIFLDSSSTSLHLIDVLSKFDGLQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAKAYNDALTYNADIAFVSCRGIDYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGHKFMHQSLACHDIDYLITDFKLDPDVEEQFKTHQITCLY |
| 1MKM Chain:A ((4-249)) | --MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKDGFEGVYIDKVEGEQSIPMVSRLGMKVDLYSTASGKSILAFVPEKELKEYLKIVELKPKT---PNTITNPRVLKRELEKIRKRGYAVDNE--ENEIGIMCVGVPIFDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MKM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -37314 for 1776 contacts (-21.0/contact) +
2D Compatibility (PS) -24847 + (NN) -50 + (LL) 1632
1D Compatibility (HY) -8800 + (ID) 1600
Total energy: -70979.0 ( -39.97 by residue)
QMean score : 0.223
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