Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADISKELIEQLVKQVVLEKMGQSSKHVDPSGILSVKLPVVKVSEEDRLDTGNPSDVVYTKDLVTLEESKRLGFGLMEMKDT-----TFDWFLDYDEVDYVIEGRLDVVIDG-RTVSAGPGEIIFIPKGSQIKFSVTG-EARFIYVTYPADWQS
1JUH Chain:A ((246-325))
--------------------------------------------------------------------DTNYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSS------
General information:
TITO was launched using:
RESULT:
Template:
1JUH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43901 for 462 contacts (-95.0/contact) +
2D Compatibility (PS) -8255 + (NN) -3435 + (LL) 5128
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -54113.0 ( -117.13 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_1JUH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JUH-query.scw
PDB file :
Tito_Scwrl_1JUH.pdb
: