Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHIRVAAIIRHQNKILLHTTKNENYWTLPGGAVE-NELTKEGLQREMREELGEEVTIRELKIIAENRFVYRGEEMDSIEFYYIVELYPNSALLELSTFTKIEQFGQNGETDYELNFKWFEIDKVSEIEILPKFLQTELTQLSSDRIKHIQ
2PQV Chain:A ((20-149))
---VRATALIVQNHKLLVTKD--KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLE---D---APLTMQE-------DEKRQPCEWIDLDKLQNIQLVPVFLKTALPDWEG-QLRH--
General information:
TITO was launched using:
RESULT:
Template:
2PQV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66136 for 939 contacts (-70.4/contact) +
2D Compatibility (PS) -12953 + (NN) 5558 + (LL) 1092
1D Compatibility (HY) -10400 + (ID) 2050
Total energy: -84889.0 ( -90.40 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_2PQV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PQV-query.scw
PDB file :
Tito_Scwrl_2PQV.pdb
: