Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNKKILFGTGLAGVGLLAAAGYTLTKKVTDYKRQQITQTL---------REFFSQMGDIQVFY---------FNEFESDIKMTSGGLVLEDGRIFEFIYRQGVLDYVEVSK
2H2M Chain:A ((1-108))
MAAGELEGGKPLSG--LLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKIRES--
General information:
TITO was launched using:
RESULT:
Template:
2H2M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45213 for 543 contacts (-83.3/contact) +
2D Compatibility (PS) -8774 + (NN) 4977 + (LL) 56
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -52554.0 ( -96.78 by residue)
QMean score : 0.228
(partial model without unconserved sides chains):
PDB file :
Tito_2H2M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H2M-query.scw
PDB file :
Tito_Scwrl_2H2M.pdb
: