Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVTVEKNRAVTFQANKELVSEAMTVLNKKNLTLSSALRLFLQNVVVTNEVDLLTEEELEKEKLFKQFQAEISKNIEDVRQGKFYTSEEVRAELGL
2K29 Chain:A ((1-50))
------MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTL---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2K29.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9518 for 216 contacts (-44.1/contact) +
2D Compatibility (PS) -5382 + (NN) -3343 + (LL) 4292
1D Compatibility (HY) -2800 + (ID) 550
Total energy: -17301.0 ( -80.10 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_2K29.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K29-query.scw
PDB file :
Tito_Scwrl_2K29.pdb
: