Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MTKQNNRMTIYYKEENLKKYEALKSFFEADEHISSMTTSATFLFLVDICYQLFIESNSGQSYSERLKQFLNSKNSDVEELKNKVKLVSRQLDQLLYLELTNFHALTKGNDFDIQDLESVHSRFDPMQHELIARIDDIIKEDVARGQAMKHSH
1HIW Chain:A ((8-122))
VLSGGELDKWEKIRLRPGGKKQYK-LKHIVWASRELERFAVNPGLLE-----------------TSEGCRQILGQLQPSLQT--------GSEELRSLYNTIAVLYCVHQR--IDVKDTKEALDKIEEEQNKSKKKAQQAAAD------------
General information:
TITO was launched using:
RESULT:
Template:
1HIW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25665 for 745 contacts (-34.4/contact) +
2D Compatibility (PS) -11761 + (NN) -3910 + (LL) 2784
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -41352.0 ( -55.51 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1HIW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HIW-query.scw
PDB file :
Tito_Scwrl_1HIW.pdb
: