Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTISNQELTLT-PLRGKSGKAYIGTYPNGERVFVKYNTTP----------ILPALAKE--QIAPQLLWARRTSNGDMMSAQEWLDGRTLTKEDMGSKQIIHILLRLHKSRPL-VNQLLQLGYKI--ENPYDLLMDWEKQ-----TPIQI-------RENTYLQSIVTELKRSLPEFRTEVATIVHGDIKHSNWVITTSGLIYLVDWDSVRLTDRMYDVAYILSHYIPQKHWKDWLSYYGYKD--NEKVWSKIIWYGQFSYLSQIIKCFDKRDMEHVNQEIYELRKFRELIKKHNAS |
| 3JR1 Chain:A ((40-309)) | --------HKEKLYSGEMNEIWLINDE-VQTVFVKINERSYRSMFRAEADQLALLAKTNSINVPLVYGIGNS-QGHSFLLLEALNKSKNK--QSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVADTLSK-HNPKPSILHGNLWIENCIQVD-DKIFVCN-PACYWGDRECDIAFSSL--FE-PFPTNFYQRYNEIYPLEEGYLERKLIYQLYYLLNFSYRYYNKK-QSYVSLTQKLINQILHK------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3JR1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -53291 for 1729 contacts (-30.8/contact) +
2D Compatibility (PS) -24500 + (NN) -557 + (LL) 1668
1D Compatibility (HY) -9200 + (ID) 2000
Total energy: -87880.0 ( -50.83 by residue)
QMean score : 0.329
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