Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MTISSAEWEIMRVVWAQQNTTSNEILAVLLEKYDWTPSTVKTLLRRLLDKGYVSREKMGKGFSYSPLIDEDLAMMSEVDSVFQKVCQTKHVAIVRHLLESIPMTEKDRLNLQSSLEAKKGKTLERVACNCIPGQCQCH
1OKR Chain:A ((4-123))
KTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNKK--------------------
General information:
TITO was launched using:
RESULT:
Template:
1OKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57322 for 694 contacts (-82.6/contact) +
2D Compatibility (PS) -12567 + (NN) -5444 + (LL) 1044
1D Compatibility (HY) -10000 + (ID) 1750
Total energy: -86039.0 ( -123.98 by residue)
QMean score : 0.620
(partial model without unconserved sides chains):
PDB file :
Tito_1OKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OKR-query.scw
PDB file :
Tito_Scwrl_1OKR.pdb
: