Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MNLQENKTAIFDNVSKLALKAGRAPE--SVHIVAVTK--YVNCQTTEALIRTGVNHIGENRVDKFLEKYQALKDEKLTWHLIGSLQRRKVKDVINY--VDYFHALDSVKLAAEIQKRAQK------PVKCFLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMA-PLKATKEEISSIFEETESLRKRLQARNIERMPFTELSMG-M-SRDYDIAIQNGSTFVRIGTSFFK
1CT5 Chain:A ((2-245))
TGITYDEDRKTQLIAQYESVREVVNAEAKNVKILLLVVSKLK--PASDIQILYDHGVREFGENYVQELIEKAKLLPDD-IKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGL-MTIGSW---------NRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIGTDIFG
General information:
TITO was launched using:
RESULT:
Template:
1CT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97618 for 1640 contacts (-59.5/contact) +
2D Compatibility (PS) -22676 + (NN) -3273 + (LL) 1352
1D Compatibility (HY) -11600 + (ID) 2700
Total energy: -136515.0 ( -83.24 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_1CT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CT5-query.scw
PDB file :
Tito_Scwrl_1CT5.pdb
: