Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--M-RLDKLLGQAGFGSRNQVKKLIRSRQVSVDGQIVTKDNVIVDSGLQSIFVGKERVCLKESSYYL-LYKPSGVVSAVRDSEHKTVIDLISEKDRVEGLYPIGRLDRDTEGLLII-TNNGPLGYRMLHPKHHVAKTYYVEVNGFLERDAITFFEEGVVFDDG-TKCKPAELTIDTANNDKSTARITITEGKFHQVKK-MFLAYGVKVIYLRRISFGDLRLDMNLKPGQYRRLRDSEAAILKRYLD
1KSK Chain:A ((1-234))
GSHMRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVL-MTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVRLTISEGRYHQVKRMFA-AVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV----
General information:
TITO was launched using:
RESULT:
Template:
1KSK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112638 for 1565 contacts (-72.0/contact) +
2D Compatibility (PS) -24110 + (NN) -4207 + (LL) 584
1D Compatibility (HY) -12400 + (ID) 3950
Total energy: -156721.0 ( -100.14 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_1KSK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KSK-query.scw
PDB file :
Tito_Scwrl_1KSK.pdb
: