Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKKMTINDIAQLSKTSKTTVSFFLNQKFEKMSDETRQRIQEVIDETGYRPSTIARSLNSKKTKLLGVLIGDITNTFSNQIVKGIEHITKQKGYQIIVGNSNYDAKSEEDYIENMLNLGVDGFIIQPTSNFRKYSRILK-EKKKPMVFFDSQLYE-HKTSWVKANNYDAVYDMTQECLNRGYKKFIMITADTSLLSTRIERASGFMDALKDNGFGYDTLVIEDDDH----SKSDIEDFLKAVVPDKEETLVFAPNCWALPMVFTAMKNLNFDMPR-VGLVGFDNIEWTDFSSPKVSTIVQPAYEEGEQVAQILINRIEGDD-SVDNQQIVDCQMFWKESTF |
1QPZ Chain:A ((1-330)) | ----ATIKDVAKRANVSTTTVSHVINKTRF-VAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLE-RNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQ---PHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREE-PQSIEVHPRLIERRSVA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1QPZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -120666 for 2682 contacts (-45.0/contact) +
2D Compatibility (PS) -35197 + (NN) -13654 + (LL) 984
1D Compatibility (HY) -16000 + (ID) 4150
Total energy: -188683.0 ( -70.35 by residue)
QMean score : 0.512
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