Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVATLIIIRGNSASGKSKIAKQLQAELGENTLLLSQDYLRREMLGT-----KDGE---NTTTIPLLINLLNYGYHNCSYIILEGILRSDWYTPVWKHILKHNPNNTYAYYYDLSFQETVKRHSTRLKSLEFGEDSLARWWLEKDF--LKEIPEKILTKAMSLEDVKKLIMTDVLP
1KNQ Chain:A ((7-172))
-DHHIYVLMGVSGSGKSAVASEVAHQL--HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYR----DLLREGNPNLSFIYLKGDFDVIESRLKARKG-HFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK
General information:
TITO was launched using:
RESULT:
Template:
1KNQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66328 for 1189 contacts (-55.8/contact) +
2D Compatibility (PS) -16543 + (NN) -5490 + (LL) 384
1D Compatibility (HY) -1200 + (ID) 1250
Total energy: -90427.0 ( -76.05 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_1KNQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KNQ-query.scw
PDB file :
Tito_Scwrl_1KNQ.pdb
: