Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIFILEDDFVQQAHFEKIIKEIRVQYNLHFKTVETFAKPVQLLESIYEIGLHNLFFLDIEIKNDEQMGLEVAKQIRQVDPYAQIVFVTTHSELMPLTFRYQVSALDYIDKGLSQEEFSQRIEEVLLYVDGICNKPLVENSFYFKSRYSQVQLPFNDLLYIETSSRSHRVVLYTEKDRMEFTATLGDILKQEPRLFQCHRSFLVNPLNIFKVDRIDRLVYFQNGTTCLVSRNKVRDIVSIVDKYQKDRKR
1SRR Chain:A ((5-119))
-KILIVDDQSGIRILLNEVFNKE------GYQTF-QAANGLQALDIVTK-ERPDLVLLDMKIPG--MDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL--------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1SRR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95589 for 913 contacts (-104.7/contact) +
2D Compatibility (PS) -12556 + (NN) -5090 + (LL) 10064
1D Compatibility (HY) -9200 + (ID) 1150
Total energy: -113521.0 ( -124.34 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_1SRR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SRR-query.scw
PDB file :
Tito_Scwrl_1SRR.pdb
: