Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPKNELNNKLNKLKHVQVYNKIFNMIQDGTYSPGMQLPSEPELAGQLNVSRATLRKSLALLQEDHLVKNIRGKGNFIRENSSNLSENGYENRQHPIKTCLTSKITEVELEFRVEVPAEAITASLKQET-PVVVIADRWYHTDDGPLAYTLSFIPIELISDAEISLHDTKQLLNFIEEGIYQEGISSHSQSHLGYATSGNFSATKYTLSDHGQFILIQETIFKQ-EKILMCNKHYVPIEHFELSITSH |
3EDP Chain:A ((7-236)) | ----------KKPLFEVIASKIKDSINRDEYKTG--MPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQPKLTAQ---NILEM-TGVMKN----LKKDIKDFYIRKAGKFYAEIFGMKENELVYSIKFVQKS-EHGATLDRLILPLGLYPDLQAKDFQIINIIELVNS-GKYKLFE--LEQELQLILAGNEQIKNMHLNENDPVFKLSSVFYAENDMPIAIQYHYEDAESTKYVVDFN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -76361 for 1614 contacts (-47.3/contact) +
2D Compatibility (PS) -23522 + (NN) -3466 + (LL) 888
1D Compatibility (HY) -9600 + (ID) 1600
Total energy: -113661.0 ( -70.42 by residue)
QMean score : 0.409
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