Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNETITYDTWNDMLSKQITDQLIDELDVLKWAYRTYGEKIVYACSFGAEGMVLLDLISKINKNAHIIFLDTGLHFQETYELIETVKERYPGFAIQMLEPELSLTEQGTKYGG--ELWKHNPNLCCQLRKIEPLKKHLS--GMTAWISGLRRDQSPTRKHIQYVNLDQKFELIKICPLIHWTWDDVWTYIRLHNLPYNKLHDQHYPSIGCEMCTLPSPDPNDERAGRWAGREKTECGLHQE
2O8V Chain:A ((33-243))------------------------AEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLK-LNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAI--QRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRK---------------LKRECGLHE-


General information:
TITO was launched using:
RESULT:

Template: 2O8V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 841 -105620 -125.59 -547.25
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : -125.59
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.518

(partial model without unconserved sides chains):
PDB file : Tito_2O8V.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2O8V-query.scw
PDB file : Tito_Scwrl_2O8V.pdb: