Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTDVARLLALRSFTELGARQRARALLDAGS-FRELLDPFAGVQSPWLERQGIVPQADDGVVVARGLLDGQPAVLAAIEGAFQGGSLGEVSGAKIAGALELAAEDNRNGVPTRALLLLETGGVRLQEANLGL---AAIAEIQAAIVDLQR-YQPVVAVIAGPVGCFGGMSIAAGLCSYVLVTR-EARLGLNGPQVIEQEAGIAEYDSRDRPFIWSLTGGE-QRFASGLADAYLADDLDEVRTSVLAYFAKGLP---------------ARPRCRRAEDYLRRLGDLDTAEQPDAAGVRRLYQGLGQGDAT |
3U9R Chain:B ((64-324)) | -----AQARHSARGKLLVRERINRLLDPGSPFLELS-ALAAHEV-Y-----GEEVAAAGIVAGIGRVEGVECMIVGNDATVKGGTYYPLTVKKHLRAQAIALE-----NRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSARGIPQIAVVMGS--CTAGGAYVPAMSDETVMVREQATIFLAGPPLVKAATGEV-VSAEE------LGGADVHCKVSGVADHYAEDDDHALAI-ARRCVANLNWRKQGQLQCRAPRAPLYPAEELYGVIPADSKQPYDVREVIARLVDGSEFDEFKALFGT |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3U9R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -106298 for 1928 contacts (-55.1/contact) +
2D Compatibility (PS) -26067 + (NN) -10873 + (LL) 844
1D Compatibility (HY) -3600 + (ID) 2550
Total energy: -148544.0 ( -77.05 by residue)
QMean score : 0.397
|
|
|