Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRRAPMFKPLPITLQRGALRLEPLVEADIPELVSLAEANREALQYMDGPTRPDWYRQSLAEQREGRALPLAVRLGVQLVGTTRFAEFLPALPACEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAIDKLGAQREGVLRNHRRLAGGRLDDTFVYSITDHEWPQVKAALEASFTG
1YRE Chain:A ((13-195))
----------LPITLQRGALRLEPLVEADIPELVSLAEANREALQYMDGPTRPDWYRQSLAEQREGRALPLAVRLGVQLVGTTRFAEFLPALPACEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAIDKLGAQREGVLRNHRRLAGGRLDDTFVYSITDHEWPQVKAALEASF--
General information:
TITO was launched using:
RESULT:
Template:
1YRE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81093 for 1385 contacts (-58.6/contact) +
2D Compatibility (PS) -19473 + (NN) -2931 + (LL) 528
1D Compatibility (HY) -24400 + (ID) 9150
Total energy: -136519.0 ( -98.57 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1YRE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YRE-query.scw
PDB file :
Tito_Scwrl_1YRE.pdb
: