Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIISVEGDLVVIRSESTFKNTEISFKLGVEFDEITPDDRKVKSIITLDGGVLVHVQKWDGKSTTIKKRRDGDKLVVECVMKGVTSTRVYERA
4AZQ Chain:A ((6-137))
SLKDLEGKWRLMESHGFEEYMKELGVGLALRKMAAMAKPDCIITCDGNNITVKTESTVKTTVFSCNLGEKFEETTADGRKTETVCTFQDGALVQHQQWDGKESTITRKLKDGKMIVECVMNNATCTRVYEKV
General information:
TITO was launched using:
RESULT:
Template:
4AZQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43381 for 968 contacts (-44.8/contact) +
2D Compatibility (PS) -14697 + (NN) -4334 + (LL) 0
1D Compatibility (HY) -11600 + (ID) 3000
Total energy: -77012.0 ( -79.56 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_4AZQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AZQ-query.scw
PDB file :
Tito_Scwrl_4AZQ.pdb
: