Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIHCTVP-SRPWWHFADYGCYCGRGGKGTAVDDLDRCCQVHDNCYGEAEK-LGC--W---PYLTLYKYECSQGKLTCSGGNNKCEAAVCNCDLVAANCFAGAPYIDANYNVNLKERCQ
1G4I Chain:A ((1-123))
ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLDKK-NC-
General information:
TITO was launched using:
RESULT:
Template:
1G4I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75253 for 870 contacts (-86.5/contact) +
2D Compatibility (PS) -12087 + (NN) -3206 + (LL) 224
1D Compatibility (HY) -11200 + (ID) 3200
Total energy: -104722.0 ( -120.37 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_1G4I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4I-query.scw
PDB file :
Tito_Scwrl_1G4I.pdb
: