Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAASIMAFGSIQVQGNIAQFGEMIRLKTGKRAELSYAFYGCHCGLGGKGSPKDATDRCCVTHDCCYKSLEKSGCGTKLLKYKYSHQGGQITCSANQNSCQKRLCQCDKAAAECFARNKKTYSLKYQFYPNMFCKGKKPKC
2QHD Chain:A ((1-122))
---------------------SVVELGKMIIQETGKSPFPSYTSYGCFCGGGERGPPLDATDRCCLAHSCCYDTL--PDCSPKTDRYKYKRENGEIICE-NSTSCKKRICECDKAVAVCLRKNLNTYNKKYTYYPNFWCKGDIEKC
General information:
TITO was launched using:
RESULT:
Template:
2QHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34760 for 900 contacts (-38.6/contact) +
2D Compatibility (PS) -13301 + (NN) -8667 + (LL) 2692
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -67886.0 ( -75.43 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_2QHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QHD-query.scw
PDB file :
Tito_Scwrl_2QHD.pdb
: