Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLGITVLAALLACASSCGVPSFPPNLSARVVGGEDARPHSWPWQISLQYLKNDTWRHTCGGTLIASNFVLTAAHCISN---TRTYRVAVGKNNLEVEDEEGSLFVGVDTIHVHKRWNALLLRNDIALIKLAEHVELSDTIQVACLPEKDSLLPKDYPCYVTGWGRLWTNGPIADKLQQGLQPVVDHATCSRIDWWGFRVKKTMVCAGG-DGVISACNGDSGGPLNCQLENGSWEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWINEKMQL
3BG8 Chain:A ((1-236))
-----------------------------IVGGTASVRGEWPWQVTLHTTSP-TQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEI-KEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGGKDACKGDSGGPLSCKH-NEVWHLVGITSWGE--GCAQRERPGVYTNVVEYVDWILEKTQ-
General information:
TITO was launched using:
RESULT:
Template:
3BG8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175122 for 1973 contacts (-88.8/contact) +
2D Compatibility (PS) -24988 + (NN) -9586 + (LL) 2088
1D Compatibility (HY) -12400 + (ID) 4550
Total energy: -224558.0 ( -113.82 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_3BG8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BG8-query.scw
PDB file :
Tito_Scwrl_3BG8.pdb
: