Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCND-QSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
1YFZ Chain:A ((27-202))
-------------------------SPM-EDIEEILITEEQLKAKVKELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAI---------DLPLSIDFLAVSSYGSSTKSSGIVKIIKDHD-IDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERREADVKVDYCGFKIPDKFVVGYGLDYAEKYRNLPFIGVLKPE-------
General information:
TITO was launched using:
RESULT:
Template:
1YFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152843 for 1348 contacts (-113.4/contact) +
2D Compatibility (PS) -19852 + (NN) -8826 + (LL) 1948
1D Compatibility (HY) -17600 + (ID) 3150
Total energy: -200323.0 ( -148.61 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_1YFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YFZ-query.scw
PDB file :
Tito_Scwrl_1YFZ.pdb
: