Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
3IKD Chain:B ((14-123))
-----------------------------------------------------RVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
General information:
TITO was launched using:
RESULT:
Template:
3IKD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32756 for 840 contacts (-39.0/contact) +
2D Compatibility (PS) -11780 + (NN) -5506 + (LL) 1112
1D Compatibility (HY) -12000 + (ID) 5400
Total energy: -66330.0 ( -78.96 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_3IKD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IKD-query.scw
PDB file :
Tito_Scwrl_3IKD.pdb
: