Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMYSKLLTLTTLLLPTALALPSLVERACDYTCGSNCYSSSDVSTAQAAGYQLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT
1RGK Chain:A ((1-104))
--------------------------ACDYTCGSNCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKYNNYQGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT
General information:
TITO was launched using:
RESULT:
Template:
1RGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55004 for 761 contacts (-72.3/contact) +
2D Compatibility (PS) -11848 + (NN) -10078 + (LL) 2712
1D Compatibility (HY) -12400 + (ID) 5050
Total energy: -91668.0 ( -120.46 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_1RGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RGK-query.scw
PDB file :
Tito_Scwrl_1RGK.pdb
: