Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPS
4HYF Chain:B ((37-240))
SPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTGRPSVNGLALAEYVIYRGEQAYPEYLITYQIMRPEG--
General information:
TITO was launched using:
RESULT:
Template:
4HYF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68632 for 1610 contacts (-42.6/contact) +
2D Compatibility (PS) -22339 + (NN) -8968 + (LL) -168
1D Compatibility (HY) -25200 + (ID) 9050
Total energy: -134357.0 ( -83.45 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_4HYF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HYF-query.scw
PDB file :
Tito_Scwrl_4HYF.pdb
: